Author

J. N. Alanko

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Bioinformatics· 1

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Approach:deep learning· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

A. C. Diseth· 1 shared J. Mackenzie· 1 shared Simon J. PuglisiiD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

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3 top collaborators · 3 mutual co-author links

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1 shared paperBioinformatics

A. C. Diseth

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1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintNov 10, 2026

Batch, Prefetch, Skip, Orient, Squeeze: Faster, Smaller k-mer dictionaries via the Spectral Burrows-Wheeler transform

A. C. Diseth, J. N. Alanko, J. Mackenzie, Simon J. Puglisi

This paper improves SBWT-based k-mer indexes by making them faster and smaller through batching, prefetching, and orientation optimization, outperforming SSHash in speed and space efficiency.

DOI 10.64898/2026.11.09.765318

whole-genome sequencingdeep learning

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