Author

J. R. Aretakis

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Biochemistry· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Organism:bacteria (other)· 2 Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Organism:C. elegans· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Assay:proteomics· 1

Frequent Co-Authors

J. M. Schrader· 3 shared A. Gega· 2 shared D. T. Tomares· 1 shared J. S. Biteen· 1 shared M. A. Samad· 1 shared M. H. M. Bharmal· 1 shared N. Al-Husini· 1 shared N. S. Muthunayake· 1 shared

Activity by Year

2019-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersMicrobiology

J. M. Schrader

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3 papers

Recent·Most cited

MicrobiologybioRxivPreprintFeb 25, 2022

Rif-Correct, a software tool for bacterial mRNA half-life estimation

J. R. Aretakis, J. M. Schrader

Rif-Correct improves mRNA half-life estimation in Rif-seq data by accounting for transcriptional runoff using transcriptome models.

DOI 10.1101/2022.02.25.481994

bacteria (other)bulk RNA-seq

𝕏 PostBluesky

BiochemistrybioRxivJul 5, 2019

BR-bodies provide selectively permeable condensates that stimulate mRNA decay and prevent release of decay intermediates

N. Al-Husini, D. T. Tomares, Z. Pfaffenberger…·J. M. Schrader

The paper identifies RNA substrates of BR-bodies and shows they stimulate mRNA decay while preventing toxic intermediates.

DOI 10.1016/j.molcel.2020.04.001

bacteria (other)bulk RNA-seq

𝕏 PostBluesky

MicrobiologybioRxivFeb 15, 2019

Absolute measurements of mRNA translation in C. crescentus reveal important fitness costs of vitamin B12 scavenging

J. R. Aretakis, A. Gega, J. M. Schrader

The paper measures mRNA translation in C. crescentus using ribosome profiling, finding that B12-related genes account for ~4.5% of protein synthesis and reveal fitness costs of B12 scavenging.

DOI 10.1128/msystems.00170-19

C. elegansproteomics

𝕏 PostBluesky