Author

J. Ruta

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 1 Biophysics· 1 Cell Biology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Assay:proteomics· 3 Research Focus:cell signaling & trafficking· 2 Research Focus:cell type annotation· 2 Approach:statistical model· 2 Assay:cryo-EM· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

F. Liu· 4 shared A. Elofsson· 2 shared B. Bogdanow· 2 shared L. Mühlberg· 2 shared M. Ruwolt· 2 shared A. Gonzalez Montoro· 1 shared A. Yushkevich· 1 shared B. Vetter· 1 shared

Activity by Year

2023-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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4 shared papersMicrobiology

F. Liu

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Structural Host-Virus Interactome Profiling of Intact Infected Cells

B. Bogdanow, L. Mühlberg, I. Gruska, B. Vetter, J. Ruta, A. Elofsson, L. Wiebusch, F. Liu

This study introduces SHVIP, a method to identify virus-host PPIs in intact infected cells, revealing 739 PPIs and validating their biological relevance through disruption experiments.

Nature Communications · Jul 21, 2025Peer-reviewedMicrobiology

Molecular architecture of synaptic vesicles.

U. Kravcenko, M. Ruwolt, J. Kroll, A. Yushkevich, M. Zenkner, J. Ruta, R. Lotfy, E. E. Wanker, C. Rosenmund, F. Liu, M. Kudryashev

This study uses cryo-electron tomography to describe the molecular architecture and structural heterogeneity of individual synaptic vesicles in mouse brains and cultured neurons.

bioRxiv · Apr 11, 2024Biophysics

Yeast TLDc domain-containing proteins control assembly and subcellular localization of the V-ATPase

S. Klossel, Y. Zhu, L. Amado, D. D. Bisinski, J. Ruta, F. Liu, A. Gonzalez Montoro

This study identifies Rtc5 and Oxr1 as TLDc domain-containing proteins that regulate V-ATPase assembly and subcellular localization in yeast.

bioRxiv · Aug 21, 2023 · PreprintCell Biology

Enhancing Inter-link Coverage in Cross-Linking Mass Spectrometry through Context-Sensitive Subgrouping and Decoy Fusion

B. Bogdanow, C. Wang, M. Ruwolt, J. Ruta, L. Mühlberg, W.-F. Zeng, A. Elofsson, F. Liu

The paper improves inter-link detection in cross-linking mass spectrometry by using a fused database and context-sensitive subgrouping, increasing coverage by 30-75% while maintaining low error rates.

bioRxiv · Jul 19, 2023 · PreprintBiochemistry