Jean-Philippe Fortin

The paper analyzes human RNA-seq data from the SRA to identify unannotated splicing junctions and their tissue-specific expression, creating a resource called intropolis.

The paper updates the minfi package to support the HumanMethylationEPIC array, introduces the ssNoob normalization method, and describes integration strategies for methylation data from multiple platforms.

This paper shows that A/B compartments can be estimated from epigenetic data across multiple platforms in various cell types, including human cancers.

The paper introduces functional normalization for 450k methylation array data, improving replication in cancer studies by reducing technical variation and batch effects.