Author

Jiangshan Bai

Broad Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Assay:ChIP-seq· 2 Approach:deep learning· 2 Assay:DNA methylation· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Organism:mouse· 1

Frequent Co-Authors

Aristotelis TsirigosiD· 2 shared Bo XiaiD· 2 shared Jimin TaniD· 2 shared Xinyu LingiD· 2 shared Anders S. HanseniD· 1 shared B BernsteiniD· 1 shared Bailey Tischer· 1 shared David FenyöiD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersGenomics

Aristotelis TsirigosORCID

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintDec 11, 2025

High-throughput in silico screen uncovers key regulators of 3D genome architecture

Jiangshan Bai, Qingji Lyu, Jimin Tan…·Bo Xia

The paper identifies ZNF654 and JMJD6 as novel factors defining TAD boundaries through in silico screens and experimental validation.

2 citations

𝕏 PostBluesky

Systems BiologybioRxivPreprintAug 17, 2025

Decoding the gene regulatory landscape through multimodal learning of protein-DNA interactions

Jimin Tan, Xi Fu, Xinyu Ling…·Bo Xia

Chromnitron predicts protein-DNA binding landscapes across cell types and proteins using multimodal learning, revealing new regulators of T cell exhaustion and dynamic shifts during neurogenesis.

2 citations

humanDNA methylation

𝕏 PostBluesky