Author

K. Markel

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Plant Biology· 5 Microbiology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 4 Organism:Arabidopsis· 2 Assay:DNA methylation· 2 Research Focus:gene regulatory network inference· 2 Organism:plant (other)· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

A. Zhou· 2 shared L. M. Waldburger· 2 shared P. M. Shih· 2 shared P. Shih· 2 shared A. Eudes· 1 shared A. J. Weisberg· 1 shared A. N. Pearson· 1 shared A. Perraki· 1 shared

Activity by Year

2020-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 15 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersPlant Biology

A. Zhou

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Cynipid wasps systematically reprogram host metabolism and restructure cell walls in developing galls

K. Markel, V. Novak, B. Bowen, Y. Tian, Y.-C. Chen, S. Sirirungruang, A. Zhou, K. Louie, T. Northen, A. Eudes, H. Scheller, P. Shih

This study investigates how Cynipid wasps alter plant metabolism and cell wall structure to form galls, revealing coordinated lignin and xylan deposition in gall vasculature.

Plant Physiology · Apr 30, 2024Peer-reviewedPlant Biology

Expression of a mammalian RNA demethylase increases flower number and floral stem branching in Arabidopsis thaliana

K. Markel, L. M. Waldburger, P. Shih

bioRxiv · Feb 15, 2024Plant Biology

Genetically refactored Agrobacterium-mediated transformation

M. Thompson, L. D. Kirkpatrick, G. M. Geiselman, L. M. Waldburger, A. N. Pearson, M. Szarzanowicz, K. M. Vuu, K. Markel, N. F. Hummel, D. D. Suazo, C. Tahmin, R. Cui, S. Liu, J. Cevallos, H. Pannu, , P. M. Shih

This paper refactors the Agrobacterium tumor-inducing plasmid into a minimal set of genes for plant and fungal transformation, demonstrating a bottom-up engineering approach.

bioRxiv · Oct 13, 2023 · PreprintMicrobiology

The trans-regulatory landscape of gene networks in plants

N. F. C. Hummel, A. Zhou, B. Li, K. Markel, I. J. Ornelas, P. M. Shih

This study maps the trans-regulatory landscape of gene networks in plants by analyzing effector domains of Arabidopsis transcription factors to understand their functional roles in gene regulation.

bioRxiv · Oct 23, 2022Plant Biology

Comparative analysis of early divergent land plants and construction of DNA tools for hyper-expression in Marchantia chloroplasts

E. Frangedakis, F. Guzman-Chavez, M. Rebmann, K. Markel, Y. Yu, A. Perraki, S. W. Tse, Y. Liu, J. Rever, S. Sauret-Gueto, B. Goffinet, H. Schneider, J. Haseloff

The paper maps chloroplast transcription patterns in Marchantia and identifies DNA tools for hyper-expression in chloroplasts by testing candidate binding sites for mRNA stabilization.

bioRxiv · Nov 27, 2020 · PreprintPlant Biology

Pavlov's pea plants? Not so fast. An attempted replication of Gagliano et al. (2016)

K. Markel

This paper attempts to replicate Gagliano et al.'s 2016 study on associative learning in pea plants but fails to reproduce the results, suggesting the need for further verification.

bioRxiv · Apr 5, 2020Plant Biology