Author

K. Panda

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Plant Biology· 4 Bioengineering· 1

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Approach:experimental assay· 5 Organism:Arabidopsis· 2 Research Focus:cell type annotation· 2 Research Focus:chromatin & epigenetic regulation· 2 Assay:DNA methylation· 2 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

R. K. Slotkin· 4 shared A. D. McCue· 2 shared A. Bhattacharya· 1 shared A. K. Dasgupta· 1 shared A. M. Chettoor· 1 shared A. Y. Husbands· 1 shared C. Warman· 1 shared D. Jiang· 1 shared

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2017-2021 · peak 2/yr

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10 top collaborators · 19 mutual co-author links

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4 shared papersPlant Biology

R. K. Slotkin

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5 papers

Recent·Most cited

An siRNA-guided Argonaute protein directs RNA Polymerase V to initiate DNA methylation

M. J. Sigman, K. Panda, R. Kirchner, L. L. McLain, H. Payne, J. R. Peasari, A. Y. Husbands, R. K. Slotkin, A. D. McCue

The paper shows that siRNA-guided ARGONAUTE proteins recruit RNA Polymerase V to initiate DNA methylation without preexisting methylation, challenging previous models of RdDM initiation.

bioRxiv · Aug 19, 2021Plant Biology

Long-Read cDNA Sequencing Enables a 'Gene-Like' Transcript Annotation of Arabidopsis Transposable Elements

K. Panda, R. K. Slotkin

The paper uses long-read cDNA sequencing to create a transcript-based annotation of transposable elements in Arabidopsis, improving TE analysis and testing hypotheses about TE regulation.

bioRxiv · Feb 20, 2020Plant Biology

Arabidopsis RNA Polymerase IV generates 21-22 nucleotide small RNAs that can participate in RNA-directed DNA methylation and may regulate genes

K. Panda, A. D. McCue, R. K. Slotkin

This study identifies that Arabidopsis Pol IV generates 21-22 nt siRNAs in sporophytic tissues, which participate in RNA-directed DNA methylation and may regulate gene transcript abundance.

bioRxiv · Nov 6, 2019Plant Biology

Highly expressed maize pollen genes display coordinated expression with neighboring transposable elements and contribute to pollen fitness

C. Warman, K. Panda, Z. Vejlupkova, S. Hokin, E. Unger-Wallace, R. A. Cole, A. M. Chettoor, D. Jiang, E. Vollbrecht, M. M. Evans, R. K. Slotkin, J. E. Fowler

This study identifies coordinated expression between highly expressed maize pollen genes and neighboring transposable elements, showing a link between transcript levels and pollen fitness.

bioRxiv · Oct 7, 2019Plant Biology

Nitric oxide sensing by chlorophyll a

A. Bhattacharya, P. Kar, P. Biswas, P. Roychoudhury, S. Basu, S. Ghosh, K. Panda, R. Pal, A. K. Dasgupta

The paper proposes using chlorophyll a to sense and classify different nitric oxide species with high sensitivity and temperature dependence.

bioRxiv · Jun 6, 2017Bioengineering