Evolutionary BiologybioRxiv
PHYLOSCANNER: Inferring Transmission from Within- and Between-Host Pathogen Genetic Diversity
C. Wymant, M. Hall, O. Ratmann…·The BEEHIVE Collaboration
PHYLOSCANNER infers transmission direction and identifies multiply infected individuals from pathogen genetic diversity across hosts using sequence data.
DOI 10.1093/molbev/msx304