Author

STOP-HCV Consortium

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 3 Research Focus:host-pathogen & immune response· 2 Organism:human· 2 Approach:statistical model· 2 Approach:Bayesian inference· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Assay:DNA methylation· 1

Frequent Co-Authors

M. A. Ansari· 2 shared V. Pedergnana· 2 shared A. Gall· 1 shared A. Magri· 1 shared A. Tellier· 1 shared C. Fraser· 1 shared C. Wymant· 1 shared D. A. Smith· 1 shared

Activity by Year

2017-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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2 shared papersEvolutionary Biology

M. A. Ansari

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3 papers

Recent·Most cited

Inference of host-pathogen interaction matrices from genome-wide polymorphism data

H. Maerkle, S. John, L. Metzger, STOP-HCV Consortium, M. A. Ansari, V. Pedergnana, A. Tellier

This paper develops a Bayesian method to infer host-pathogen interaction matrices from genome-wide polymorphism data and applies it to HCV-infected humans to identify new resistance genes and GxG interactions.

bioRxiv · Jul 6, 2023Evolutionary Biology

Viral genome wide association study identifies novel hepatitis C virus polymorphisms associated with sofosbuvir treatment failure

D. A. Smith, A. Magri, R. Bowden, N. Chaturvedi, J. Fellay, J. McLauchlan, G. R. Foster, W. L. Irving, STOP-HCV Consortium, P. Simmonds, V. Pedergnana, E. Barnes, M. A. Ansari

This study identifies three HCV polymorphisms in NS2 and NS3 proteins associated with sofosbuvir treatment failure using whole genome sequencing of 507 patients.

bioRxiv · May 5, 2020Microbiology

PHYLOSCANNER: Inferring Transmission from Within- and Between-Host Pathogen Genetic Diversity

C. Wymant, M. Hall, O. Ratmann, D. Bonsall, T. Golubchik, M. de Cesare, A. Gall, M. Cornelissen, C. Fraser, STOP-HCV Consortium, The Maela Pneumococcal Collaboration, The BEEHIVE Collaboration

PHYLOSCANNER infers transmission direction and identifies multiply infected individuals from pathogen genetic diversity across hosts using sequence data.

bioRxiv · Nov 17, 2017Evolutionary Biology