Author

N. Wagner

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 3 Biochemistry· 2 Ecology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:cell type annotation· 2 Assay:imaging· 2 Assay:proteomics· 2 Organism:zebrafish· 2 Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Research Focus:cell signaling & trafficking· 1

Frequent Co-Authors

J. Gierten· 2 shared J. Wittbrodt· 2 shared L. Hufnagel· 2 shared N. Norlin· 2 shared R. Prevedel· 2 shared T. Pupko· 2 shared A. Kreshuk· 1 shared A. Lohmann· 1 shared

Activity by Year

2018-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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2 shared papersBioengineering

J. Gierten

Mutual co-authors in cluster

Author profile →

7 papers

Recent·Most cited

Genetic and functional diversity help explain pathogenic, weakly pathogenic, and commensal lifestyles in the genus Xanthomonas

M. M. Pena, R. Bhandari, R. M. Bowers, K. Weis, E. Newberry, N. Wagner, T. Pupko, J. B. Jones, T. Woyke, B. A. Vinatzer, M.-A. Jacques, N. Potnis

This study examines the genetic and functional diversity of Xanthomonas strains to understand their pathogenic, weakly pathogenic, and commensal lifestyles through genomic analysis and phylogenetic relationships.

bioRxiv · May 31, 2023 · PreprintEcology

Nearest-neighbor effects modulate loxP spacer DNA chemical shifts and guide oligonucleotide design for NMR studies

N. Wagner, M. P. Foster

The paper identifies a 16-bp loxP spacer oligonucleotide that preserves structural features for NMR studies, revealing nearest-neighbor effects dominate chemical shifts.

bioRxiv · Aug 13, 2021Biochemistry

Human iPSC-derived mesodermal progenitor cells preserve their vasculogenesis potential after extrusion and form hierarchically organized blood vessels

L. Dogan, R. Scheuring, N. Wagner, Y. Ueda, P. Woersdoerfer, J. Groll, S. Erguen

This study shows that human iPSC-derived mesodermal progenitor cells can form hierarchical blood vessels after extrusion in bioprinting, mimicking embryonic vasculogenesis.

bioRxiv · May 9, 2021Bioengineering

Deep learning-enhanced light-field imaging with continuous validation

N. Wagner, F. Beuttenmueller, N. Norlin, J. Gierten, J. Wittbrodt, M. Weigert, L. Hufnagel, R. Prevedel, A. Kreshuk

This paper introduces a deep learning framework for light-field microscopy that uses continuous validation during image reconstruction, achieving high-quality video-rate reconstructions of medaka heart dynamics and zebrafish neural activity.

bioRxiv · Jul 30, 2020Bioengineering

Addressing lipid structural diversity in signalling: Photochemical probes for live-cell lipid biochemistry

M. Schuhmacher, A. T. Grasskamp, N. Wagner, B. Lombardot, J. S. Schuhmacher, P. Sala, A. Lohmann, I. Henry, A. Shevchenko, U. Coskun, A. M. Walter, A. Nadler

This study develops photochemical probes to manipulate diacylglycerol species in live cells, revealing structural diversity impacts on protein binding and signaling.

bioRxiv · Jul 22, 2019Biochemistry

Show me your secret(ed) weapons: a multifaceted approach reveals novel type III-secreted effectors of a plant pathogenic bacterium

I. Jimenez guerrero, F. Perez-Montano, G. M. da Silva, N. Wagner, D. Shkedy, M. Zhao, L. Pizarro, M. Bar, R. Walcott, G. Sessa, T. Pupko, S. Burdman

This study identifies 51 T3E genes and seven novel T3Es in Acidovorax citrulli using bioinformatics and experimental validation, revealing its extensive T3E arsenal.

bioRxiv · Jun 22, 2019Microbiology

Instantaneous isotropic volumetric imaging of fast biological processes

N. Wagner, N. Norlin, J. Gierten, G. de Medeiros, B. Balazs, J. Wittbrodt, L. Hufnagel, R. Prevedel

This paper introduces a method for high-speed, isotropic 3D imaging of biological processes with single-cell resolution and minimal motion artefacts.

bioRxiv · Nov 1, 2018Bioengineering