O. Berkowitz

FTSH3 facilitates complex I degradation through a direct interaction with the complex I subunit PSST

This study identifies FTSH3's role in complex I degradation by directly interacting with PSST, requiring its ATPase activity for proteolysis and turnover.

Spatially Resolved Transcriptomic Analysis of the Germinating Barley Grain

This study develops a spatial transcriptomics workflow to analyze gene expression during barley grain germination, revealing spatially specific gene expression patterns and their functional roles.

Single Cell App: An App for Single Cell RNA-sequencing Data Visualization, Comparison and Discovery

The Single Cell App enables visualization and comparison of scRNA-seq data, revealing study-specific gene expression patterns and cell-type specific responses.

GmSALT3 expression improves reactive oxygen species detoxification in salt-stressed soybean roots

The paper uses RNA-seq to show that GmSALT3 improves ROS detoxification in salt-stressed soybean roots by enhancing antioxidant activity and related pathways.

RNA-seq analysis of laser micro-dissected Arabidopsis thaliana leaf epidermis, mesophyll and vasculature defines tissue-specific transcriptional responses to multiple stress treatments

The paper analyzes RNA-seq data from three leaf tissues of Arabidopsis under various stress treatments to identify tissue-specific transcriptional responses and regulatory networks.

Identification of a unique ZIP transporter involved in zinc uptake via the arbuscular mycorrhizal fungal pathway

This study identifies MtZIP14 as a key zinc transporter facilitating zinc uptake from arbuscular mycorrhizal fungi to plants, improving plant growth and zinc nutrition under low zinc conditions.

The genetic origin of evolidine, the first cyclopeptide discovered in plants, and related orbitides

The paper rediscovered evolidine, a plant cyclic peptide, and identified its biosynthetic origin through de novo transcriptomics, revealing a diverse family of related peptides in Rutaceae.

Developmental Normalization of Phenomics Data Generated by High Throughput Plant Phenotyping Systems

The paper introduces DAPD, a normalization method for plant phenomics data, which reduces variance and improves measurement uniformity compared to sowing-time normalization.

Novel cyclic peptides in seed of Annona muricata are ribosomally synthesised

The paper identifies ten novel cyclic peptides in Annona muricata seeds and reveals their ribosomal biosynthesis mechanism through transcriptomic and mass spectrometry analysis.