O. Francino

This study uses long-read metagenomics and Hi-C to assemble high-quality canine MAGs and identify prophages and plasmids.

This study uses long amplicon Nanopore sequencing to identify fungi at the species level in clinical samples and demonstrates its effectiveness in detecting fungal communities in dogs with otitis.

This study uses Nanopore sequencing to analyze colistin resistance genes and other antibiotic resistance genes in pigs, cows, and farmers, identifying genetic contexts and transmission risks.

The paper uses shallow long-read metagenomics with Nanopore sequencing on pooled canine fecal samples to improve taxonomic resolution and identify an uncultured CrAssphage.

This study evaluates long-amplicon PCR-based approaches using Nanopore sequencing for microbiota profiling at genus and species levels, finding that the rrn operon provides higher resolution than full-length 16S rRNA.