Author

O. Simakov

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 2 Cell Biology· 1

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Research Focus:cell type annotation· 2 Research Focus:chromatin & epigenetic regulation· 2 Research Focus:gene regulatory network inference· 2 Approach:comparative / phylogenetic analysis· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Organism:Drosophila· 1 Assay:electronic health records· 1

Frequent Co-Authors

A. A. Wanner· 1 shared A. Beavan· 1 shared A. Kreshuk· 1 shared B. Fromm· 1 shared B. Titze· 1 shared C. Genoud· 1 shared C. J. Winchell· 1 shared C. Pape· 1 shared

Activity by Year

2020-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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1 shared paperCell Biology

A. A. Wanner

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Author profile →

3 papers

Recent·Most cited

Acceleration of genome rearrangement in clitellate annelids

D. T. Schultz, E. A. C. Heath-Heckman, C. J. Winchell, D.-H. T. Kuo, Y.-s. Yu, F. Oberauer, K. Kocot, S.-J. Cho, O. Simakov, D. A. Weisblat

The paper compares 12 clitellate genomes and 11 outgroup representatives to show that genome rearrangements in Clitellata began at their base and significantly shaped the Hox cluster evolution.

bioRxiv · May 12, 2024 · PreprintEvolutionary Biology

microRNAs as Indicators into the Causes and Consequences of Whole Genome Duplication Events

K. J. Peterson, A. Beavan, P. Chabot, M. L. McPeek, D. Pisani, B. Fromm, O. Simakov

This study investigates the role of microRNAs in whole genome duplication events, finding that miRNA paralogues are functionally equivalent and that miRNA seed sequence diversity, not WGDs, correlates with morphological complexity.

bioRxiv · Sep 1, 2021Evolutionary Biology

Whole-body integration of gene expression and single-cell morphology

H. M. Vergara, C. Pape, K. Meechan, V. Zinchenko, C. Genoud, A. A. Wanner, B. Titze, R. Templin, P. Y. Bertucci, O. Simakov, P. Machado, E. L. Savage, Y. Schwab, R. W. Friedrich, A. Kreshuk, , D. Arendt

The paper integrates gene expression and single-cell morphology in Platynereis dumerilii to identify spatially coherent cell groups defined by transcription factors.

bioRxiv · Feb 26, 2020Cell Biology