Author

D. Arendt

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 2 Cell Biology· 1 Zoology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 4 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Assay:scRNA-seq· 2 Assay:bulk RNA-seq· 1 Approach:comparative / phylogenetic analysis· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

A. P. Oel· 2 shared A. A. Wanner· 1 shared A. Barreiro-Iglesias· 1 shared A. Kreshuk· 1 shared B. Titze· 1 shared C. Genoud· 1 shared C. Pape· 1 shared C. Schneider· 1 shared

Activity by Year

2020-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersEvolutionary Biology

A. P. Oel

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Author profile →

4 papers

Recent·Most cited

Beyond sequence similarity: cross-phyla protein annotation by structural prediction and alignment

F. Ruperti, N. Papadopoulos, J. Musser, M. Mirdita, M. Steinegger, D. Arendt

This paper introduces MorF, a tool using structural similarity to annotate protein functions in sponges, improving annotation beyond sequence-based methods.

bioRxiv · Jul 5, 2022Evolutionary Biology

Reconstructing the ancestral vertebrate brain using a lamprey neural cell type atlas

F. Lamanna, F. Hervas-Sotomayor, A. P. Oel, D. Jandzik, D. Sobrido-Camean, M. L. Martik, S. A. Green, T. Brüning, K. Mössinger, J. Schmidt, C. Schneider, M. Sepp, F. Murat, J. J. Smith, M. E. Bronner, , H. Kaessmann

This study reconstructs the ancestral vertebrate brain by comparing a lamprey neural cell type atlas with data from jawed vertebrates, identifying shared features and evolutionary novelties.

bioRxiv · Feb 28, 2022 · PreprintEvolutionary Biology

Whole-body integration of gene expression and single-cell morphology

H. M. Vergara, C. Pape, K. Meechan, V. Zinchenko, C. Genoud, A. A. Wanner, B. Titze, R. Templin, P. Y. Bertucci, O. Simakov, P. Machado, E. L. Savage, Y. Schwab, R. W. Friedrich, A. Kreshuk, , D. Arendt

The paper integrates gene expression and single-cell morphology in Platynereis dumerilii to identify spatially coherent cell groups defined by transcription factors.

bioRxiv · Feb 26, 2020Cell Biology

Characterization of eyes, photoreceptors and opsins in developmental stages of the chaetognath Spadella cephaloptera

T. Wollesen, S. V. Rodriguez Monje, A. P. Oel, D. Arendt

This study identifies and characterizes opsins and photoreceptor cells in the developmental stages of the chaetognath Spadella cephaloptera, revealing xenopsin and cryptochrome expression patterns.

bioRxiv · Jan 16, 2020 · PreprintZoology