Author

P. F. Ferreira

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 2

Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Research Focus:cancer & tumor microenvironment· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Assay:scRNA-seq· 1 Research Focus:transcription & RNA processing· 1 Research Focus:variant calling· 1

Frequent Co-Authors

J. Kuipers· 2 shared N. Beerenwinkel· 2 shared K. Jahn· 1 shared M. A. Tuncel· 1 shared

Activity by Year

2020-2021 · peak 1/yr

Co-Author Collaboration Network

4 top collaborators · 6 mutual co-author links

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2 shared papersCancer Biology

J. Kuipers

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2 papers

Recent·Most cited

Cancer BiologybioRxivPreprintNov 4, 2021

Mapping single-cell transcriptomes to copy number evolutionary trees

P. F. Ferreira, J. Kuipers, N. Beerenwinkel

SCATrEx maps single-cell transcriptomes to copy number evolutionary trees, revealing clone-specific gene expression heterogeneity in tumors.

DOI 10.1101/2021.11.04.467244

𝕏 PostBluesky

Cancer BiologybioRxivApr 28, 2020

Single-cell copy number calling and event history reconstruction

J. Kuipers, M. A. Tuncel, P. F. Ferreira…·N. Beerenwinkel

This paper develops SCICoNE, a statistical model for single-cell copy number analysis from low-depth sequencing data, showing its accuracy on simulated data and application to breast cancer samples.

DOI 10.1093/bioinformatics/btaf072

humanwhole-genome sequencing

𝕏 PostBluesky