Author

Paul D Adams

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 2 Plant Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:protein structure prediction· 2 Organism:Arabidopsis· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Assay:cryo-EM· 1 Approach:deep learning· 1 Assay:imaging· 1

Frequent Co-Authors

Alexandre Urzhumtsev· 1 shared Andrew H Van Benschoten· 1 shared Benjamin A Barad· 1 shared Chandrajit Bajaj· 1 shared Edgar G. Yap· 1 shared Frank DiMaio· 1 shared James Fraser· 1 shared James S Fraser· 1 shared

Activity by Year

2015-2018 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 12 mutual co-author links

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1 shared paperBiophysics

Alexandre Urzhumtsev

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3 papers

Recent·Most cited

Plant BiologybioRxivPreprintDec 10, 2018

Cryo-Electron tomography 3D structure and nanoscale model of Arabidopsis thaliana cell wall

Purbasha Sarkar, Michal Kowalczyk, Salil Apte…·Manfred Auer

Cryo-electron tomography and mechanical simulations revealed cell wall 3D architecture, optimized for flexibility/ductility.

DOI 10.1101/492140

Arabidopsisimaging

𝕏 PostBluesky

BiophysicsbioRxivFeb 3, 2015

Side-chain-directed model and map validation for 3D Electron Cryomicroscopy

Benjamin A Barad, Nathaniel Echols, Ray Yu-Ruei Wang…·James S Fraser

This paper introduces EMRinger, a method to validate atomic models against cryo-EM maps by analyzing side-chain dihedral angles, showing its utility in model refinement and radiation damage assessment.

DOI 10.1038/nmeth.3541

cryo-EMdeep learning

𝕏 PostBluesky

BiophysicsbioRxivJan 2, 2015

From deep TLS validation to ensembles of atomic models built from elemental motions

Alexandre Urzhumtsev, Pavel Afonine, Andrew H Van Benschoten…·Paul D Adams

The paper introduces a framework to validate TLS matrices in X-ray refinement and generate structural ensembles consistent with these parameters.

DOI 10.1107/s1399004715011426

structural biologystatistical model

𝕏 PostBluesky