R. F. Alford

The paper introduces 12 benchmarks to evaluate implicit membrane energy functions using diverse datasets and demonstrates their application with the franklin2019 energy function.

This study uses SMD and docking to test if PLB interacts with alternative sites on SERCA beyond the canonical site, finding that the canonical site is preferred but alternative sites are favorable under certain conditions.

This paper develops an implicit membrane model for protein structure prediction and design, improving accuracy in membrane protein properties and sequence recovery.

The paper explains the Rosetta all-atom energy function, its mathematical models, and its application to biomolecular modeling and design, including new capabilities for membrane proteins and other macromolecules.