Author

R. Jimenez

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 1 Biophysics· 1 Developmental Biology· 1 Microbiology· 1 Scientific Communication & Education· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Research Focus:cell type annotation· 3 Organism:human· 3 Assay:bulk RNA-seq· 2 Research Focus:clustering· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Assay:fluorescence / live-cell microscopy· 1

Frequent Co-Authors

A. E. Palmer· 2 shared A. Ekrem· 1 shared A. Gonzalez-Beltran· 1 shared A. Hurtado· 1 shared A. J. Wierzba· 1 shared A. Kenall· 1 shared A. Lister· 1 shared A. Pirani· 1 shared

Activity by Year

2018-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 9 mutual co-author links

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2 shared papersBiophysics

A. E. Palmer

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Complete male-to-female sex reversal in XY mice lacking the miR-17~92 cluster

A. Hurtado, I. Mota-Gomez, M. Lao, F. M. Real, J. Jedamzick, M. Burgos, D. G. Lupianez, R. Jimenez, F. J. Barrionuevo

This study shows that deleting the miR-17~92 microRNA cluster in XY mice causes complete male-to-female sex reversal by disrupting Sry expression and Sertoli cell differentiation.

bioRxiv · Mar 22, 2023 · PreprintDevelopmental Biology

Phenotypic and genomic diversification in complex carbohydrate degrading human gut bacteria

N. A. Pudlo, K. Urs, R. Crawford, A. Pirani, T. Atherly, R. Jimenez, N. Terrapon, B. Henrissat, D. A. Peterson, C. Ziemer, E. S. Snitkin, E. Martens

The paper identifies genomic and phenotypic diversity in carbohydrate-degrading gut bacteria, showing variation in substrate utilization and evidence of gene transfer shaping metabolic capabilities.

bioRxiv · Jul 15, 2021Microbiology

Structure-guided point mutations on FusionRed produce a brighter red fluorescent protein

S. Mukherjee, S. Hung, N. Douglas, P. Manna, C. D. Thomas, A. Ekrem, A. E. Palmer, R. Jimenez

The paper reports a brighter variant of the red fluorescent protein FusionRed, FusionRed-MQV, through structure-guided mutations that improve fluorescence properties.

bioRxiv · Apr 20, 2020 · PreprintBiophysics

FAIRsharing, a cohesive community approach to the growth in standards, repositories and policies

S.-A. Sansone, P. McQuilton, P. Rocca-Serra, A. Gonzalez-Beltran, M. Izzo, A. Lister, M. Thurston, D. Batista, R. Granell, M. Adekale, D. Dauga, E. Ganley, S. Hodson, R. Lawrence, V. Khodiyar, , Lynch

The paper introduces FAIRsharing, a community-driven resource that evaluates and promotes standards, databases, and repositories to improve data reuse and interoperability in research.

bioRxiv · Sep 26, 2018 · PreprintScientific Communication & Education

Riboglow: a multicolor riboswitch-based platform for live cell imaging of mRNA and small non-coding RNA in mammalian cells

E. Braselmann, A. J. Wierzba, J. T. Polaski, M. Chrominski, Z. Holmes, S.-T. Hung, D. Batan, J. Wheeler, R. Parker, R. Jimenez, D. Gryko, R. T. T. Batey, A. E. Palmer

The paper introduces Riboglow, a multicolor riboswitch-based platform for live cell imaging of mRNA and small non-coding RNA in mammalian cells, showing it outperforms existing methods with a smaller RNA tag.

bioRxiv · Apr 9, 2018Biochemistry