Author

Ruolan Qiu

University of Washington

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 3

Signature Assays, Organisms & Methods

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Assay:Hi-C· 3 Approach:experimental assay· 2 Organism:human· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1 Research Focus:cell type annotation· 1 Research Focus:gene regulatory network inference· 1 Organism:mouse· 1

Frequent Co-Authors

Choli LeeiD· 3 shared Jay ShendureiD· 3 shared Vijay RamaniiD· 3 shared William Stafford NobleiD· 3 shared Christine M. DistècheiD· 2 shared Giancarlo BonoraiD· 2 shared Xinxian DengiD· 2 shared Zhijun Duan· 2 shared

Activity by Year

2019-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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3 shared papersGenomics

Choli LeeORCID

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3 papers

Recent·Most cited

GenomicsGenome biologyPeer-reviewedSep 27, 2021

Single-cell landscape of nuclear configuration and gene expression during stem cell differentiation and X inactivation

Giancarlo Bonora, Vijay Ramani, Ritambhara Singh…·Christine M. Distèche

The paper integrates single-cell RNA-seq, ATAC-seq, and Hi-C data to study nuclear configuration and gene expression changes during stem cell differentiation and X inactivation, revealing discrete structural changes and delayed chromatin compaction.

26 citations

mousescRNA-seq

𝕏 PostBluesky

GenomicsbioRxivPreprintNov 18, 2019

Capturing cell type-specific chromatin structural patterns by applying topic modeling to single-cell Hi-C data

Hyeon-Jin Kim, Galip Gürkan Yardımcı, Giancarlo Bonora…·William Stafford Noble

This study uses topic modeling on scHi-C data to identify cell type-specific chromatin structural patterns and compartment structures.

4 citations

humanHi-C

𝕏 PostBluesky

GenomicsMethodsPeer-reviewedSep 16, 2019

Sci-Hi-C: a single-cell Hi-C method for mapping 3D genome organization in large number of single cells

Vijay Ramani, Xinxian Deng, Ruolan Qiu…·Zhijun Duan

Sci-Hi-C is a single-cell Hi-C method that maps 3D genome organization in large numbers of single cells, enabling analysis of chromatin interactions and cellular variability.

86 citationstop 4%

humanHi-C

𝕏 PostBluesky