Author

S. Octavia

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Immunology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Assay:whole-genome sequencing· 3 Research Focus:phylogenetics / evolution· 2 Organism:bacteria (other)· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Research Focus:drug response / drug discovery· 1 Research Focus:genome assembly· 1

Frequent Co-Authors

D. Hu· 2 shared R. Lan· 2 shared V. Sintchenko· 2 shared Z. Xu· 2 shared A. D. Keil· 1 shared A. Torres· 1 shared B. T. K. Lee· 1 shared B. Wang· 1 shared

Activity by Year

2018-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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2 shared papersMicrobiology

D. Hu

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Genomic epidemiology and multilevel genome typing of Bordetella pertussis

M. Payne, Z. Xu, D. Hu, S. Kaur, S. Octavia, V. Sintchenko, R. Lan

This paper introduces a multilevel genome typing system for Bordetella pertussis to improve surveillance and understanding of circulating strains and their public health risks.

bioRxiv · Apr 26, 2023 · PreprintMicrobiology

Genomic dissection of the microevolution of Australian epidemic Bordetella pertussis

Z. XU, D. Hu, L. D. W. Luu, S. Octavia, A. D. Keil, V. Sintchenko, M. M. Tanaka, F. R. Mooi, J. Robson, R. Lan

This study analyzes the genomic and phylogeographic dynamics of B. pertussis in Australia, revealing lineage expansion, selective sweeps, and spatial spread patterns linked to vaccination and transmission.

bioRxiv · Jan 5, 2022Microbiology

Neutralizing antibodies from early cases of SARS-CoV-2 infection offer cross-protection against the SARS-CoV-2 D614G variant.

C. Y.-P. Lee, S. N. Amrun, R. S.-L. Chee, Y. S. Goh, T. M. Mak, S. Octavia, N. Yeo, Z. W. Chang, M. Z. Tay, A. Torres, G. Carissimo, C. M. Poh, S.-W. Fong, B. Wang, S. Lee, , L. F. P. Ng

This study shows that antibodies from early SARS-CoV-2 infections neutralize both the original and D614G variants, though neutralizing capacity decreases over time.

bioRxiv · Oct 8, 2020 · PreprintImmunology

Evaluation of whole genome sequencing for the identification and typing of Vibrio cholerae

D. R. Greig, U. Schafer, S. Octavia, E. Hunter, M. A. Chattaway, T. J. Dallman, C. Jenkins

This study evaluates whole genome sequencing for identifying and typing Vibrio cholerae isolates, finding high concordance with traditional methods and geographic clustering of ST69 isolates from UK travellers.

bioRxiv · May 22, 2018Microbiology