Author

S. Spiro

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 2 Microbiology· 2

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Organism:bacteria (other)· 2 Approach:experimental assay· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:ecology & biodiversity· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

H. Davidson· 2 shared T. A. Graham· 2 shared A. Aktipis· 1 shared A. Boddy· 1 shared A. M. Boddy· 1 shared A. Peraza· 1 shared A. Ray· 1 shared A. Zehnder· 1 shared

Activity by Year

2022-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersCancer Biology

H. Davidson

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Choline degradation in Paracoccus denitrificans: identification of sources of formaldehyde

T. Parekh, M. Tsai, S. Spiro

The paper identifies formaldehyde sources from choline degradation in Paracoccus denitrificans and shows that flhSR mutants cannot grow on methanol, methylamine, and choline.

bioRxiv · Dec 12, 2023 · PreprintMicrobiology

Cancer Prevalence Across Vertebrates

Z. T. Compton, W. Mellon, V. Harris, S. Rupp, D. Mallo, S. Kapsetaki, M. Wilmot, R. Kennington, K. Noble, C. Baciu, L. Ramirez, A. Peraza, B. Martins, S. Sudhakar, S. Aksoy, , A. Boddy

The paper analyzes cancer prevalence across 292 vertebrate species and finds that neoplasia prevalence increases with adult weight and mutation rate but decreases with gestation time.

bioRxiv · Feb 15, 2023Cancer Biology

DksA, ppGpp and RegAB regulate nitrate respiration in Paracoccus denitrificans

A. Ray, S. Spiro

This paper identifies DksA, ppGpp, and the RegAB two-component system as regulators of nitrate respiration in Paracoccus denitrificans, showing their roles in controlling NAP and Nar expression under different growth conditions.

bioRxiv · Jan 17, 2023Microbiology

AI-powered pan-species computational pathology: bridging clinic and wildlife care

K. AbdulJabbar, S. P. Castillo, K. Hughes, H. Davidson, A. M. Boddy, L. M. Abegglen, E. P. Murchinson, T. A. Graham, S. Spiro, C. Palmieri, Y. Yuan

This study develops a pan-species computational pathology atlas using AI to analyze cancer morphology across species, finding that accuracy varies with morphological similarity and introduces a new metric for veterinary applications.

bioRxiv · Mar 5, 2022 · PreprintCancer Biology