Author

L. Ramirez

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 1 Cancer Biology· 1 Microbiology· 1 Physiology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Research Focus:chromatin & epigenetic regulation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

A. Aktipis· 1 shared A. Boddy· 1 shared A. D. Patterson· 1 shared A. Peraza· 1 shared A. Zehnder· 1 shared B. Martins· 1 shared B. Troan· 1 shared C. A. Mucci· 1 shared

Activity by Year

2020-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 28 mutual co-author links

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Curved chords = mutual co-authorship

1 shared paperCancer Biology

A. Aktipis

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

A diet-dependent host metabolite shapes the gut microbiota to protect from autoimmunity

M. Alexander, V. Upadhyay, R. Rock, L. Ramirez, K. Trepka, P. Puchalska, D. Orellana, Q. Y. Ang, C. Whitty, J. A. Turnbaugh, Y. Tian, D. Dumlao, R. R. Nayak, A. D. Patterson, J. C. Newman, , P. J. Turnbaugh

This study shows that a ketogenic diet reduces autoimmune disease in mice by altering host metabolism and shaping gut microbiota, specifically through β-hydroxybutyrate and Lactobacillus species.

bioRxiv · Nov 2, 2023Microbiology

Cancer Prevalence Across Vertebrates

Z. T. Compton, W. Mellon, V. Harris, S. Rupp, D. Mallo, S. Kapsetaki, M. Wilmot, R. Kennington, K. Noble, C. Baciu, L. Ramirez, A. Peraza, B. Martins, S. Sudhakar, S. Aksoy, , A. Boddy

The paper analyzes cancer prevalence across 292 vertebrate species and finds that neoplasia prevalence increases with adult weight and mutation rate but decreases with gestation time.

bioRxiv · Feb 15, 2023Cancer Biology

Data-driven models of optimal chromatic coding in the outer retina

L. Ramirez, R. Dickman

This paper develops data-driven models to study chromatic coding in zebrafish retinas, finding that dominant inhibitory feedback optimizes color information encoding.

bioRxiv · Feb 7, 2022 · PreprintBiophysics

Fast weight recovery, metabolic rate adjustment and gene-expression regulation define responses of cold-stressed honey bee brood

L. Ramirez, F. Luna, C. A. Mucci, L. Lamattina

This study investigates how cold-stress affects honey bee brood, finding rapid metabolic and gene expression changes that support recovery and survival.

bioRxiv · Jun 15, 2020Physiology