Author

Saradha Venkatchalapathy

National University of Singapore

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Bioinformatics· 1

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Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1 Organism:human· 1 Assay:imaging· 1 Organism:mouse· 1 Approach:optimal transport· 1 Assay:spatial transcriptomics· 1 Research Focus:trajectory inference· 1

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Ali C. SoylemezogluiD· 1 shared Caroline UhleriD· 1 shared G. V. ShivashankariD· 1 shared Karren YangiD· 1 shared Karthik Damodaran· 1 shared

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2018-2018 · peak 1/yr

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Recent·Most cited

BioinformaticsbioRxivPreprintOct 29, 2018

Autoencoder and Optimal Transport to Infer Single-Cell Trajectories of Biological Processes

Karren Yang, Karthik Damodaran, Saradha Venkatchalapathy…·Caroline Uhler

This paper introduces ImageAEOT, a method combining autoencoders and optimal transport to infer single-cell trajectories from imaging data, validated on chromatin images of cancer cells and tissues.

9 citations

humanmouse

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