Author

Shafiat Dewan

Cambridge Consultants (United Kingdom)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Assay:protein sequence· 2 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Organism:E. coli· 1 Research Focus:gene regulatory network inference· 1 Approach:machine learning (classical)· 1 Research Focus:perturbation response prediction· 1 Research Focus:protein design· 1

Frequent Co-Authors

Anna Schooneveld· 2 shared David Berman· 2 shared Kotryna Bloznelyte· 2 shared Will Addison· 2 shared Akash Kumar GuptaiD· 1 shared Ece Ibrahimi· 1 shared Fikayo Adepoju· 1 shared Frances Patricia Jones· 1 shared

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2024-2025 · peak 1/yr

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10 top collaborators · 45 mutual co-author links

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2 shared papersSystems Biology

Anna Schooneveld

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2 papers

Recent·Most cited

Systems BiologybioRxivPreprintOct 29, 2025

An Improved Systematic Method for Constructing ecGEMs using a Protein-Chemical Transformer

Anna Schooneveld, Shafiat Dewan, Navot Arad…·David Berman

The paper introduces a transformer-based method to predict kcat values for E. coli enzymes, improving ecGEMs with fewer calibrations and better performance than existing models.

DOI 10.1101/2025.10.29.684458

E. coliprotein sequence

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BioinformaticsbioRxivPreprintAug 20, 2024

Protein Language Models in Directed Evolution

Russell G. Maguire, Kotryna Bloznelyte, Fikayo Adepoju…·Ian Taylor

This paper demonstrates how protein language models can guide directed evolution to improve PET degradation enzyme variants.

1 citation

protein sequencedeep learning

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