Author

Kotryna Bloznelyte

Cambridge Consultants (United Kingdom)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Molecular Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:drug response / drug discovery· 2 Assay:protein sequence· 2 Approach:deep learning· 1 Organism:E. coli· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Approach:machine learning (classical)· 1 Research Focus:perturbation response prediction· 1

Frequent Co-Authors

Anna Schooneveld· 2 shared David Berman· 2 shared Shafiat Dewan· 2 shared Will Addison· 2 shared Akash Kumar GuptaiD· 1 shared Andrew E. FirthiD· 1 shared Ben F. LuisiiD· 1 shared Ece Ibrahimi· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersSystems Biology

Anna Schooneveld

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3 papers

Recent·Most cited

Systems BiologybioRxivPreprintOct 29, 2025

An Improved Systematic Method for Constructing ecGEMs using a Protein-Chemical Transformer

Anna Schooneveld, Shafiat Dewan, Navot Arad…·David Berman

The paper introduces a transformer-based method to predict kcat values for E. coli enzymes, improving ecGEMs with fewer calibrations and better performance than existing models.

DOI 10.1101/2025.10.29.684458

E. coliprotein sequence

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BioinformaticsbioRxivPreprintAug 20, 2024

Protein Language Models in Directed Evolution

Russell G. Maguire, Kotryna Bloznelyte, Fikayo Adepoju…·Ian Taylor

This paper demonstrates how protein language models can guide directed evolution to improve PET degradation enzyme variants.

1 citation

protein sequencedeep learning

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Molecular BiologyJournal of VirologyPeer-reviewedMay 6, 2021

The stem loop 2 motif is a site of vulnerability for SARS-CoV-2

Valeria Lulla, Michal P. Wandel, Katarzyna Justyna Bandyra…·Ben F. Luisi

The paper identifies the stem loop 2 motif as a vulnerable site in SARS-CoV-2 that can be targeted by antisense oligonucleotides to inhibit replication and infection.

101 citationstop 3%

experimental assaydrug response / drug discovery

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