Author

T. Haque

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 4 Plant Biology· 2

Signature Assays, Organisms & Methods

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Organism:plant (other)· 4 Approach:statistical model· 4 Assay:bulk RNA-seq· 3 Research Focus:gene regulatory network inference· 3 Research Focus:chromatin & epigenetic regulation· 2 Research Focus:development & morphogenesis· 2 Research Focus:differential expression· 2 Assay:DNA methylation· 2

Frequent Co-Authors

L. Zhang· 3 shared S. Razzaque· 3 shared T. E. Juenger· 3 shared J. Schmutz· 2 shared T. Juenger· 2 shared X. Weng· 2 shared A. Sreedasyam· 1 shared B. G. Badiger· 1 shared

Activity by Year

2019-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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3 shared papersEvolutionary Biology

L. Zhang

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Author profile →

6 papers

Recent·Most cited

Evolutionary analyses of gene expression divergence in Panicum hallii: exploring constitutive and plastic responses using reciprocal transplants

B. Govinal Badiger, T. Haque, J. Bonette, J. D. Napier, D. Bauer, J. Schmutz, T. Juenger

This study examines gene expression divergence in Panicum hallii using reciprocal transplants, finding constitutive divergence but no plastic responses, and links divergence to cis-regulatory factors.

bioRxiv · May 19, 2023 · PreprintEvolutionary Biology

Natural variation identifies new effectors of water use efficiency in Arabidopsis.

B. G. Badiger, J. R. Lasky, S. Razzaque, L. Zhang, T. Haque, J. E. Bonnette, G. Z. Civelek, P. E. Verslues, T. E. Juenger

This study uses natural variation in Arabidopsis to identify 25 genes affecting water use efficiency through GWAS and reverse genetics, revealing diverse biological processes involved in WUE.

bioRxiv · Mar 28, 2022Plant Biology

Transcriptome and DNA methylome dynamics reveal differential characteristics of inflorescence development between two ecotypes in Panicum hallii

X. Weng, H. Song, A. Sreedasyam, T. Haque, L. Zhang, C. Chen, Y. Yoshinaga, M. Williams, R. C. O'Malley, J. Grimwood, J. Schmutz, T. E. Juenger

A comparative transcriptome and DNA methylome analysis of inflorescence between upland and lowland ecotypes reveals gene expression and DNA methylation variation underlying inflorescence divergence in Panicum hallii.

bioRxiv · Feb 28, 2022 · PreprintEvolutionary Biology

A pleiotropic flowering time QTL exhibits gene-by-environmental interaction for fitness in a perennial grass

X. Weng, T. Haque, L. Zhang, S. Razzaque, J. T. Lovell, J. D. Palacio-Mejia, P. Duberney, J. L. Reilley, J. Bonnette, T. E. Juenger

This study identifies a flowering time QTL in Panicum hallii that shows gene-by-environment interaction affecting fitness, with coastal allele advantage only in its local habitat.

bioRxiv · Feb 26, 2022 · PreprintEvolutionary Biology

Salt tolerance QTL derived from the Bangladeshi landrace Horkuch

T. Haque, S. M. Elias, S. Razzaque, S. Sudip Biswas, S. F. Khan, N. A. Jewel, S. Rahman, T. Juenger, Z. I. Seraj

The paper identifies salt tolerance QTL in rice using a reciprocal mapping population and highlights cytoplasm-nuclear interactions and trait co-localization.

bioRxiv · Mar 1, 2020Plant Biology

Whole genome sequencing of Herpes Simplex Virus 1 directly from human cerebrospinal fluid reveals selective constraints in neurotropic viruses.

F. Lassalle, M. A. Beale, T. Bharucha, C. A. Williams, R. J. Williams, J. Cudini, R. A. Goldstein, T. Haque, D. P. Depledge, J. Breuer

This study uses whole genome sequencing of HSV-1 from CSF and skin lesions to identify selective constraints and recombination patterns in neurotropic viruses.

bioRxiv · Dec 6, 2019Evolutionary Biology