Author

T. Ikegami

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:protein structure prediction· 2 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Organism:mouse· 1 Assay:protein structure· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1

Frequent Co-Authors

T. Konuma· 2 shared A. Kashiwagi· 1 shared A. Nagadoi· 1 shared A. Nishiyama· 1 shared C. B. Mulholland· 1 shared C. Tsuchiya· 1 shared D. Haxholli· 1 shared E. Chikaishi· 1 shared

Activity by Year

2022-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersBiochemistry

T. Konuma

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

NMR analysis of the homodimeric structure of a D-Ala-D-Ala metallopeptidase, VanX, from vancomycin-resistant bacteria

T. Konuma, T. Takai, C. Tsuchiya, M. Nishida, M. Hashiba, Y. Yamada, H. Shirai, A. Nagadoi, E. Chikaishi, K.-i. Akagi, S. Akashi, T. Yamazaki, H. Akutsu, T. Ikegami

The paper determines the dimeric structure of VanX using NMR and identifies a monomeric form for inhibitor screening.

bioRxiv · Oct 13, 2023Biochemistry

Revealing Gene Expression Heterogeneity in a Clonal Population of Tetrahymena thermophila through Single-Cell RNA Sequencing

H. Kojima, A. Kashiwagi, T. Ikegami

The paper uses scRNA-seq to analyze gene expression variability in a clonal population of Tetrahymena thermophila, identifying six clusters with distinct functional annotations.

bioRxiv · Aug 6, 2023 · PreprintMicrobiology

Structural basis for the unique multifaceted interaction of DPPA3 with the UHRF1 PHD finger

K. Hata, N. Kobayashi, K. Sugimura, W. Qin, D. Haxholli, Y. Chiba, S. Yoshimi, G. Hayashi, H. Onoda, T. Ikegami, C. B. Mulholland, A. Nishiyama, M. Nakanishi, H. Leonhardt, T. Konuma, K. Arita

This study determines the structure of the mouse UHRF1 PHD domain complexed with DPPA3, revealing how DPPA3 inhibits UHRF1 chromatin localization through unique interactions.

bioRxiv · Jun 14, 2022Biochemistry