Author

V. Loux

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 4

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Approach:experimental assay· 2 Assay:metagenomics· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1

Frequent Co-Authors

O. Rue· 2 shared A. Mathieu· 1 shared B. Fremaux· 1 shared C. Feurer· 1 shared C. Neuveglise· 1 shared D. Sicard· 1 shared D. Werner· 1 shared E. Dugat-Bony· 1 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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2 shared papersMicrobiology

O. Rue

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Holistic integration of omics data reveals the drivers that shape the ecology of microbial meat spoilage scenarios

S. Poirier, G. Coeuret, M.-C. Champomier-Verges, M.-H. Desmonts, D. Werner, C. Feurer, B. Fremaux, S. Guillou, M.-L. Ngoc-Du, M. Zagorec, O. Rue, V. Loux, S. Chaillou

This study integrates multi-omic data from meat production to identify key factors shaping microbial spoilage scenarios in poultry and pork sausages.

bioRxiv · Aug 31, 2023Microbiology

Comparison of metabarcoding taxonomic markers to describe fungal communities in fermented foods

O. Rue, M. Cotton, E. Dugat-Bony, K. Howell, F. Irlinger, J.-L. Legras, V. Loux, E. Michel, J. Mounier, C. Neuveglise, D. Sicard

This study compares fungal metabarcoding markers and pipelines to assess their accuracy in identifying fungal species in fermented foods.

bioRxiv · Jan 13, 2023Microbiology

Gene co-expression network analysis of the human gut commensal bacterium Faecalibacterium prausnitzii based on WGCNA in R-Shiny

S. Auger, V. Mournetas, H. Chiapello, V. Loux, P. Langella, J.-M. Chatel

This study uses WGCNA to analyze gene expression in F. prausnitzii, identifying co-expression modules linked to metabolic processes and stress response mechanisms.

bioRxiv · Jul 10, 2022Microbiology

The enemy from within: a prophage of Roseburia intestinalis systematically turns lytic in the mouse gut, driving bacterial adaptation by CRISPR spacer acquisition

J. K. Cornuault, E. Moncaut, V. Loux, A. Mathieu, H. Sokol, M.-A. Petit, M. De Paepe

This study shows prophages in Roseburia intestinalis become lytic in the mouse gut, driving bacterial adaptation through CRISPR spacer acquisition and phage resistance.

bioRxiv · Mar 13, 2019Microbiology