Author

V. Rybenkov

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Biophysics· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 3 Research Focus:cell signaling & trafficking· 2 Research Focus:drug response / drug discovery· 2 Approach:experimental assay· 2 Organism:Arabidopsis· 1 Research Focus:cell type annotation· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:development & morphogenesis· 1

Frequent Co-Authors

G. Malloci· 2 shared H. I. Zgurskaya· 2 shared I. V. Leus· 2 shared J. Mehla· 2 shared P. Ruggerone· 2 shared S. Gervasoni· 2 shared A. Bosin· 1 shared A. S. Duerfeldt· 1 shared

Activity by Year

2020-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 34 mutual co-author links

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2 shared papersBiophysics

G. Malloci

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Predicting Permeation of Compounds across the Outer Membrane of P. aeruginosa Using Molecular Descriptors: Advantages and Limitations

P. D. Manrique, I. Leus, C. A. Lopez, J. Mehla, G. Malloci, S. Gervasoni, A. Vargiu, R. Kinthada, L. Herndon, N. Hengartner, J. K. Walker, V. Rybenkov, P. Ruggerone, H. Zgurskaya, S. Gnanakaran

This study identifies molecular descriptors predictive of compound permeation across P. aeruginosa outer membrane using physicochemical, docking, and MD simulation data.

bioRxiv · Sep 2, 2023 · PreprintBiophysics

Molecular determinants of avoidance and inhibition of Pseudomonas aeruginosa MexB efflux pump

S. Gervasoni, J. Mehla, C. Bergen, I. V. Leus, E. Margiotta, G. Malloci, A. Bosin, A. V. Vargiu, O. Lomovskaya, V. RYBENKOV, P. Ruggerone, H. I. Zgurskaya

This study investigates how different compounds interact with the MexB efflux pump of Pseudomonas aeruginosa, revealing distinct interaction patterns that distinguish inhibitors from substrates.

bioRxiv · Jun 1, 2023 · PreprintMicrobiology

Structure-Uptake Relationship Studies of Oxazolidinones in Gram-negative ESKAPE Pathogens

Z. Hu, I. V. Leus, B. Chandar, B. Sherborne, Q. P. Avila, V. RYBENKOV, H. I. Zgurskaya, A. S. Duerfeldt

This study investigates how structural changes in oxazolidinones affect their permeation and activity in Gram-negative bacteria, identifying analogs with broad-spectrum activity.

bioRxiv · Jun 27, 2022Microbiology

Alternating dynamics of oriC, SMC and MksBEF in segregation of Pseudomonas aeruginosa chromosome

H. Zhao, B. Bhowmik, V. Rybenkov

This study investigates the roles of SMC and MksBEF condensins in chromosome organization and segregation in Pseudomonas aeruginosa, revealing their distinct and coordinated dynamics.

bioRxiv · May 23, 2020Microbiology