Author

Valentina Boeva

Primary ORCID profile (0000-0002-4382-7185 · 25 papers)Unclaimed ORCID profile · follow to get notified of new preprints

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Same name, identified by ORCID

Valentina BoevaiD25 papers · SIB Swiss Institute of Bioinformatics

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:database / resource· 2 Research Focus:software / tool· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Approach:deep learning· 1

Frequent Co-Authors

Emmanuel Barillot· 2 shared Paul Deveau· 2 shared Adam Novak· 1 shared Ali GhaffaariiD· 1 shared Andrei Zinovyev· 1 shared Angela BelliniiD· 1 shared Anne BolandiD· 1 shared Bas E Dutilh· 1 shared

Activity by Year

2016-2016 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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2 shared papersBioinformatics

Emmanuel Barillot

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3 papers

Recent·Most cited

GenomicsBriefings in BioinformaticsPeer-reviewedOct 21, 2016

Computational Pan-Genomics: Status, Promises and Challenges

Tobias Marschall, Manja Marz, Thomas Abeel…·Pisan

This paper reviews computational pan-genomics, discussing its status, potential, and challenges across multiple biological disciplines.

DOI 10.1093/bib/bbw089

whole-genome sequencingstatistical model

𝕏 PostBluesky

BioinformaticsbioRxivPreprintJul 22, 2016

Calculating biological module enrichment or depletion and visualizing data on large-scale molecular maps with ACSNMineR and RNaviCell R packages

Paul Deveau, Emmanuel Barillot, Valentina Boeva…·Eric Bonnet

The paper introduces two R packages, ACSNMineR and RNaviCell, for pathway enrichment analysis and visualization of biological data on molecular maps.

DOI 10.1101/064469

bulk RNA-seqstatistical model

𝕏 PostBluesky

Cancer BiologybioRxivMay 19, 2016

Clonal assessment of functional mutations in cancer based on a genotype-aware method for clonal reconstruction

Paul Deveau, Leo Colmet Daage, Derek Oldridge…·Valentina Boeva

The paper introduces QuantumClone, a method for clonal reconstruction in cancer that accounts for variant allele frequencies and genotypes, and applies it to neuroblastoma samples to identify recurrently altered pathways in different clonal populations.

DOI 10.1093/bioinformatics/bty016

humanwhole-genome sequencing

𝕏 PostBluesky