Author

Y. Sakakibara

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Organism:non-human primate· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Assay:metagenomics· 1

Frequent Co-Authors

A. Toyoda· 2 shared E. Sasaki· 2 shared M. Uehara· 2 shared S. Hase· 2 shared T. Inoue· 2 shared M. Kominato· 1 shared

Activity by Year

2021-2024 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 15 mutual co-author links

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2 shared papersMicrobiology

A. Toyoda

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2 papers

Recent·Most cited

MicrobiologymSystemsPeer-reviewedMay 16, 2024

Decoding host-microbiome interactions through co-expression network analysis within the non-human primate intestine

M. Uehara, T. Inoue, S. Hase…·Y. Sakakibara

This study identifies gene modules from host-microbiome co-expression networks in marmoset intestines, revealing spatially varying interactions and new bacterial genes mediating host-microbiome relationships.

DOI 10.1128/msystems.01405-23

non-human primatebulk RNA-seq

𝕏 PostBluesky

MicrobiologybioRxivPreprintOct 12, 2021

Development of a metatranscriptomic analysis method for multiple intestinal sites and its application to the common marmoset intestine

M. Uehara, T. Inoue, M. Kominato…·Y. Sakakibara

The paper develops a metatranscriptomic analysis method integrating metagenome and metatranscriptome to study functional changes in the microbiome across intestinal sites in common marmosets, revealing dynamic gene expression patterns.

DOI 10.1101/2021.10.12.464166

non-human primatemetagenomics

𝕏 PostBluesky