Author

Chia-Yi Cheng

National Taiwan UniversityORCID 0000-0001-5054-5525Unclaimed ORCID profile · follow to get notified of new preprints

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Chia-Yi Cheng2 papers · National Taiwan University

Biology Disciplines

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Bioinformatics· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Organism:plant (other)· 2 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Approach:machine learning (classical)· 1 Assay:proteomics· 1 Assay:snRNA-seq· 1 Approach:statistical model· 1

Frequent Co-Authors

Ming-Jung LiuiD· 2 shared Ting-Ying WuiD· 2 shared Hsiu-Ju Yang· 1 shared Huan-Chi Tien· 1 shared Kuan-Hung Lin· 1 shared Lavakau Thalimaraw· 1 shared Ming-Ren Yen· 1 shared Ming‐Ren YeniD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersPlant Biology

Ming-Jung LiuORCID

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2 papers

Recent·Most cited

Plant BiologybioRxivPreprintNov 12, 2026

Heat Shock Transcription Factor B1 Coordinates Distinct bHLH Modules to Orchestrate Land Plant Adaptation

Huan-Chi Tien, Kuan-Hung Lin, Hsiu-Ju Yang…·Ting-Ying Wu

The paper identifies HSFB1 as a regulator coordinating developmental and stress response programs in land plants using snRNA-seq and gene network analysis.

DOI 10.64898/2026.11.09.765476

plant (other)snRNA-seq

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BioinformaticsPlant Molecular BiologyPeer-reviewedAug 1, 2025

TISCalling: Leveraging Machine Learning to Identify Translational Initiation Sites in Plants and Viruses

Ming‐Ren Yen, Yaru Li, Chia‐Yi Cheng…·Ming‐Jung Liu

TISCalling identifies and ranks translational initiation sites in plants and viruses using machine learning and statistical analysis, providing prediction scores and web tools for visualization.

1 citation

plant (other)virus

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