Author

Maria Boulougouri

École Polytechnique Fédérale de LausanneORCID 0000-0001-5969-3292Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Approach:graph neural network· 1

Frequent Co-Authors

Adrià Aterido· 1 shared Alexandra–Chloé VillaniiD· 1 shared Ana Maria CorralizaiD· 1 shared Ángela Sanzo-MachucaiD· 1 shared Antonio Fernández‐NebroiD· 1 shared Antonio JuliàiD· 1 shared Azucena SalasiD· 1 shared Britta SiegmundiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperImmunology

Adrià Aterido

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintMar 23, 2026

Learning gene interactions from tabular gene expression data using Graph Neural Networks

Maria Boulougouri, Vamsi Nallapareddy, Pierre Vandergheynst

This paper introduces REGEN, a GNN framework for learning gene interaction networks from bulk transcriptomic data and predicting patient outcomes, showing improved performance across cancer types.

DOI 10.64898/2026.03.19.712949

humanbulk RNA-seq

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ImmunologyNature MedicinePeer-reviewedJan 12, 2026

Interpretable Inflammation Landscape of Circulating Immune cells

Laura Jiménez-Gracia, Davide Maspero, Sergio Aguilar-Fernández…·Holger Heyn

This paper constructs a single-cell atlas of circulating immune cells to understand inflammation across diseases and develops a classifier for inflammatory diseases.

26 citationstop 1%

humanscRNA-seq

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