Karsten Hokamp

The paper maps DNA methylation and transcriptomes in Salmonella enterica to reveal growth-stage-specific methylation patterns and their regulatory roles.

The paper develops two compatible plasmids for studying sRNA-mediated post-transcriptional regulation in Acinetobacter baumannii and validates new sRNA-mRNA interactions.

This paper identifies Arp, a small RNA that represses pilin translation, thereby inhibiting DNA uptake and twitching motility in A. baumannii.

This study uses a GFP-reporter library to profile Salmonella transcriptional dynamics during macrophage infection, revealing condition-specific regulation and novel gene activity.

The paper identifies a small regulatory RNA, Aar, that represses virulence-related genes in A. baumannii through antisense base-pairing, revealing sRNA-mediated gene regulation in this pathogen.

The paper identifies a new sublineage of Salmonella Typhimurium ST313 in Malawi with a gene expression signature and increased fitness compared to its parent lineage.

This study shows that gene copy number correlates with expression levels of orthologous genes in Saccharomyces pastorianus strains during fermentation, influencing fermentation properties through differential contributions of S. cerevisiae and S. eubayanus alleles.

The paper identifies a non-coding SNP in the pgtE promoter of Salmonella ST313 that increases PgtE expression, contributing to serum resistance and virulence in a chicken model.

The paper identifies 82 candidate connectivity labels in the developing thalamus using bioinformatics and clustering analyses of gene expression patterns.