Guillaume Croville

The paper identifies a novel gammacoronavirus causing enteritis in broiler chickens in France, distinct from known poultry coronaviruses.

The paper presents a framework for real-time genomic characterization of pathogens, resistance, and host range in wetlands using passive sampling and nanopore sequencing, finding higher pathogen and AMR gene abundance in anthropogenically impacted sites.

The paper detects and isolates H5N1 clade 2.3.4.4b avian influenza virus from ticks parasitizing a naturally infected gull, highlighting ticks as potential non-invasive surveillance tools for HPAIV.

The paper evaluates duck slurry as a matrix for detecting avian influenza viruses and characterizing their genetics, finding high sensitivity and partial genomic data.

The paper evaluates nanopore sequencing for rapid AIV profiling, showing its ability to accurately reconstruct viral genomes and detect RNA modifications.

The paper characterizes H5N1 virus infection in a Tibetan black bear using histopathology and sequencing of paraffin-embedded tissues, finding high genetic similarity to a gull strain and evidence of mammalian adaptation.

The paper describes an amplicon-based MinION sequencing workflow for rapid genetic typing of avian influenza viruses from field samples, showing links between outbreaks through phylogenetic analysis.