Author

Tim Faro

LMU KlinikumORCID 0000-0001-8805-051XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Organism:mouse· 1

Frequent Co-Authors

Johannes KerstingiD· 2 shared Markus ListiD· 2 shared Alexander DietrichiD· 1 shared Amira MetwalyiD· 1 shared Amit M. FenniD· 1 shared Bärbel StecheriD· 1 shared Chit Tong LioiD· 1 shared David Gómez‐VarelaiD· 1 shared

Activity by Year

2022-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersMicrobiology

Johannes KerstingORCID

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2 papers

Recent·Most cited

MicrobiologyCell Host & MicrobePeer-reviewedJul 15, 2024

Mitochondrial perturbation in the intestine causes microbiota-dependent injury and gene signatures discriminative of inflammatory disease

Elisabeth Urbauer, Doriane Aguanno, Nora Mindermann…·Dirk Haller

The paper shows mitochondrial dysfunction in intestinal epithelium leads to microbiota-dependent injury and identifies gene signatures that distinguish active from inactive inflammation in IBD.

60 citationstop 2%

mousebulk RNA-seq

𝕏 PostBluesky

BioinformaticsNAR Genomics and BioinformaticsPeer-reviewedJun 1, 2022

Alternative splicing analysis benchmark with DICAST

Amit M. Fenn, Olga V. Tsoy, Tim Faro…·Markus List

DICAST benchmarks alternative splicing analysis tools, showing STAR and HISAT2 perform best, and proposes a reporting standard for event detection.

19 citations

bulk RNA-seqbenchmark study

𝕏 PostBluesky