Siobhán M. Brady

RADIX is a deep learning framework that segments root anatomical structures across species and platforms, revealing genetic and environmental influences on root barriers.

This study identifies soil microbiological and physicochemical factors influencing Striga seed bank and sorghum infestation in Ethiopian soils.

The paper shows that nitrogen responses in plant roots are cell-type specific and evolve across species, with NLP7 proteins modulating these responses in Arabidopsis and tomato.

This study identifies cell-specific Na+ accumulation patterns in tomato leaves and links them to symplastic transport regulation via PDLP1.

The paper identifies three homeodomain zinc-finger transcription factors that repress cambium activity in Arabidopsis by inhibiting auxin, cytokinin, and TDIF-PXY target genes.

The paper uses transcriptomic data and single-cell profiling to identify transcription factors involved in early lateral root development in response to nitrogen availability.

The paper maps transcription factor-promoter interactions for PSY/PSYR genes in Arabidopsis, identifies key regulators of root growth, and validates a CRF10-binding motif's role in growth regulation.

This study shows that drought causes rice to temporarily disengage from its mycorrhizal symbiosis, which reverses when water is restored.

This paper constructs a sorghum pangenome and identifies trait-associated variants to inform climate-aware genome-enabled breeding strategies.

This study identifies SlMYB41, SlMYB92, and SlWRKY71 as regulators of suberin biosynthesis in tomato root exodermis, revealing their antagonistic roles in suberization.

The paper identifies ERF and WRKY transcription factors that regulate IDA expression and abscission timing in Arabidopsis, with WRKY57 playing a key role in biotic stress responses.

The paper constructs a genome-scale transcriptional regulatory network for Arabidopsis metabolic genes, revealing distinct regulatory principles compared to microbes.

The paper develops a dual-color luciferase reporter system for faster and more consistent characterization of transcriptional regulatory elements in plants.

The paper describes a crowdsourcing initiative, CACAO, where undergraduates contribute gene function annotations to the Gene Ontology, enhancing coverage and enabling community-driven curation.

The paper profiles translatomes and chromatin accessibility in plant root cell types to reveal gene function innovation, conservation, and repurposing across species.