Author

Hanh N. Tran

Pennsylvania State UniversityORCID 0000-0002-0563-9490Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 3 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Assay:bulk RNA-seq· 2 Research Focus:database / resource· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Assay:metagenomics· 2 Research Focus:variant calling· 2

Frequent Co-Authors

Emily DavenportiD· 2 shared Yonas I. TekleiD· 2 shared Cheryl A. KelleriD· 1 shared Erica P. RyuiD· 1 shared Fang WangiD· 1 shared Fang WangiD· 1 shared Gregory S. YochumiD· 1 shared Isimeme N. Udu· 1 shared

Activity by Year

2021-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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2 shared papersBioinformatics

Emily DavenportORCID

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4 papers

Recent·Most cited

BioinformaticsMicrobiomePeer-reviewedOct 5, 2026

SCiMS: Sex Calling in Metagenomic Sequences

Hanh N. Tran, Kobie J. Kirven, Emily Davenport

SCiMS predicts host chromosomal sex from metagenomic data, outperforming existing tools at low host coverage and across species.

DOI 10.1186/s40168-026-02547-x

humanmultiple species

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GenomicsbioRxivPreprintMay 14, 2026

Integrative host transcriptomic and mucosal microbiome profiling reveals region-specific host-microbiome associations across the human intestine

Erica P. Ryu, Cheryl A. Keller, Robert G. Nichols…·Emily Davenport

The paper identifies region-specific host-microbiome associations in the human intestine using transcriptomic and microbiome data from non-inflamed tissue.

DOI 10.64898/2026.05.13.725025

humanbulk RNA-seq

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GenomicsbioRxivPreprintApr 20, 2022

Omics of an enigmatic marine amoeba uncovers unprecedented giant viruses gene trafficking and provides insights into its complex life cycle

Yonas I. Tekle, Hanh N. Tran, Fang Wang…·Isimeme N. Udu

The paper uses integrated omics to study Trichosphaerium, revealing its complete meiosis toolkit, sexual-like processes, and high gene trafficking from giant viruses.

2 citations

bulk RNA-seqwhole-genome sequencing

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GenomicsbioRxivPreprintDec 21, 2021

Draft Genome of Cochliopodium minus (Amoebozoa): Insights into Its Complex Sexual Behavior, Across Domain Gene Acquisitions and Metazoan Type Signaling

Yonas I. Tekle, Fang Wang, Hanh N. Tran…·Joseph F. Ryan

This paper presents a draft genome of Cochliopodium minus, revealing lateral gene transfers and meiosis-related genes, and insights into its sexual behavior.

3 citations

whole-genome sequencingstatistical model

𝕏 PostBluesky