AI-enabled rhodopsin design for blue-light enhanced bacterial growth
Haris Saeed, Michael Lewis, Takayoshi Fujiwara…·Wei E. Huang
This study uses AI to design novel microbial rhodopsins that absorb blue light and enhance bacterial growth.
Author
The Institute for Solid State Physics, The University of TokyoORCID 0000-0002-0605-1816Unclaimed ORCID profile · follow to get notified of new preprints
6 papers
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Haris Saeed, Michael Lewis, Takayoshi Fujiwara…·Wei E. Huang
This study uses AI to design novel microbial rhodopsins that absorb blue light and enhance bacterial growth.
María del Carmen Marín, Masae Konno, Andrey Rozenberg…·Keiichi Inoue
The paper identifies and characterizes two novel bacterial schizorhodopsins from Antarctic sources, demonstrating their inward proton-pumping activity and revealing distinct evolutionary and functional features.
Marı́a del Carmen Marı́n, Shunya Murakoshi, Andrey Rozenberg…·Keiichi Inoue
The paper identifies widespread xanthorhodopsin genes in cyanobacteria and characterizes a unique variant from an Antarctic cyanobacterium that binds hydroxylated lutein, enhancing light-harvesting efficiency in extreme environments.
Iota Ebisu, Tatsuki Tanaka, Yuma Kawasaki…·Osamu Nureki
The paper reports cryo-EM structures of two methanogenic Schizorhodopsins, revealing distinct proton transport mechanisms and structural adaptations for thermal stability.
Shunki Takaramoto, Chenxiang Zhao, Masayuki Karasuyama…·Keiichi Inoue
The paper uses a machine-learning model to predict red-shifted channelrhodopsin variants, identifying ChR024 with a maximum absorption wavelength of ~578 nm for optogenetics.
Gali Tzlil, Marı́a del Carmen Marı́n, Yuma Matsuzaki…·Oded Béjà
The paper reports light energy transfer from hydroxylated carotenoids to heimdallarchaeial rhodopsins in marine archaea, showing light-harvesting capabilities in archaea similar to bacterial rhodopsins.