Jeremy Wang

The paper introduces rammap, a Rust reimplementation of minimap2 with improved performance and memory safety, demonstrating compatibility and efficiency improvements.

The paper introduces vmwhere, a tool for analyzing tetrameric microsatellites from long-read sequencing data, and shows its application in linking GGAA repeat structure to chromatin state in Ewing sarcoma.

This study identifies PRAME as a therapeutic target in NUT carcinoma, showing its high expression and susceptibility to T-cell mediated cytotoxicity via PRAME epitopes presented by HLA Class I molecules.

The paper shows that ecDNA allows tumors to adapt rapidly by maintaining a spectrum of gene expression levels across cells, rather than relying on clonal expansion.

The paper investigates genetic diversity and sex differentiation in Lutzomyia longipalpis, identifying sex chromosomes and population structure across South America.

This study demonstrates real-time genomic classification of pediatric acute leukemia using long-read sequencing with adaptive sampling, identifying key alterations faster than traditional methods.

This paper describes the cell biology and genome of Stentor pyriformis, a mixotrophic ciliate, revealing unique features of its endosymbiotic relationship with Chlorella variabilis.

The paper introduces FMLRC2, a tool for polishing de novo nanopore assemblies, and demonstrates its effectiveness for bacterial and eukaryotic genomes.

The paper introduces ptGAUL, a pipeline for assembling plastomes from long-read data, showing it produces accurate assemblies and revealing long repeats and rearrangements in Juncus plastomes.

The paper develops a long-read sequencing method to identify and distinguish AIEC strains in intestinal tissue, showing their ability to colonize IBD-susceptible mice and induce inflammation.

This study uses whole genome sequencing to analyze the prevalence and spread of antimicrobial resistance genes in E. coli isolates from Malawi, showing increased prevalence of ST131 and blaCTX-M-15.

The paper shows non-linear sequence similarity between Xist and Rsx repeat domains, suggesting shared functional roles through similar protein-binding motif enrichments.