Author

José A. Valdes Franco

Cornell UniversityORCID 0000-0002-0887-5827Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Organism:zebrafish· 2 Assay:ChIP-seq· 1 Research Focus:gene regulatory network inference· 1 Research Focus:imputation· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Edward S. BuckleriD· 2 shared David TzengiD· 1 shared Joseph L. GageiD· 1 shared Lynn JohnsoniD· 1 shared M. Cinta RomayiD· 1 shared María Katherine Mejía-GuerraiD· 1 shared Peter J. BradburyiD· 1 shared Pinghua LiiD· 1 shared

Activity by Year

2020-2020 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersGenomics

Edward S. BucklerORCID

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintAug 31, 2020

A Maize Practical Haplotype Graph Leverages Diverse NAM Assemblies

José A. Valdes Franco, Joseph L. Gage, Peter J. Bradbury…·M. Cinta Romay

The paper constructs a maize pangenome haplotype graph (PHG) to improve genotype imputation accuracy across diverse germplasm using WGS and GBS data.

34 citations

zebrafishwhole-genome sequencing

𝕏 PostBluesky

Molecular BiologybioRxivPreprintJan 7, 2020

The transcription regulatory code of a maize leaf

Xiaoyu Tu, María Katherine Mejía-Guerra, José A. Valdes Franco…·Silin Zhong

This study uses ChIP-seq to map TF binding in maize leaves, reconstructs a regulatory network covering 77% of expressed genes, and shows its conserved evolution across species.

3 citations

zebrafishChIP-seq

𝕏 PostBluesky