Author
Chihao Zhang
Chinese Academy of SciencesORCID 0000-0002-2135-5690Unclaimed ORCID profile · follow to get notified of new preprints
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Biology Disciplines
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2023-2026 · peak 1/yrCo-Author Collaboration Network
5 top collaborators · 7 mutual co-author linksFocal author (center)Selected co-authorORCID co-authorUnlinked name
Curved chords = mutual co-authorship3 papers
Recent·Most cited
- BioinformaticsbioRxivPreprint
Batch Effects Remain a Fundamental Barrier to Universal Embeddings in Single-Cell Foundation Models
Linting Wang, Chihao Zhang, Shihua Zhang
This paper evaluates single-cell foundation models and finds they struggle to remove batch effects, limiting their ability to create universal cellular embeddings.
DOI 10.64898/2025.12.19.695371 - BioinformaticsNucleic Acids ResearchPeer-reviewed
STAMarker: Determining spatial domain-specific variable genes with saliency maps in deep learning
Chihao Zhang, Kangning Dong, Kazuyuki Aihara…·Shihua Zhang
STAMarker identifies spatial domain-specific variable genes using saliency maps in deep learning, outperforming existing methods on sparse spatial transcriptomic data.
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