Author
Timothy Nottoli
Yale UniversityORCID 0000-0002-2218-5590Unclaimed ORCID profile · follow to get notified of new preprints
Biology Disciplines
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2018-2026 · peak 6/yrCo-Author Collaboration Network
10 top collaborators · 27 mutual co-author links14 papers
Recent·Most cited
- NeuroscienceNaturePeer-reviewed
Competing Programs Shape Cortical Sensorimotor-Association Axis Development
Jeremiah Tsyporin, Menglei Zhang, Cai Qi…·Nenad Šestan
The paper presents the MIND model, showing that competing induction and exclusion programs shape the sensorimotor-to-association axis in the neocortex across species.
- ImmunologyNature AgingPeer-reviewed
GDF3 promotes adipose tissue macrophage-mediated inflammation via altered chromatin accessibility during aging
In Hwa Jang, Anna Carey, Victor Kruglov…·Christina D. Camell
This study shows that GDF3 promotes inflammation in aged adipose tissue macrophages via SMAD2/3 signaling and chromatin changes, offering a therapeutic target for age-related inflammation.
- NeuroscienceCell GenomicsPeer-reviewed
Cell type-specific dysregulation of gene expression due to Chd8 haploinsufficiency during mouse cortical development
Kristina Yim, Marybeth Baumgartner, Martina Krenzer…·James P. Noonan
This study identifies cell type-specific gene expression changes in Chd8 haploinsufficient mouse cortex during development, highlighting dysregulation in progenitors and neurons.
- Cancer BiologybioRxivPreprint
On-target toxicity limits the efficacy of CDK11 inhibition against cancers with 1p36 deletions
Linda Julian, Lisa Crozier, Devon A. Lukow…·Jason M. Sheltzer
This study shows CDK11 is critical for cancer cell survival and identifies 1p36 deletions as a biomarker for CDK11 inhibitor sensitivity, but on-target toxicity limits therapeutic efficacy.
5 citations - NeuroscienceeLifePeer-reviewed
Heterozygosity for neurodevelopmental disorder-associated TRIO variants yields distinct deficits in behavior, neuronal development, and synaptic transmission in mice.
Yevheniia Ishchenko, Amanda T. Jeng, Shufang Feng…·Anthony J. Koleske
This study examines how different heterozygous TRIO variants in mice affect behavior, brain development, and synaptic function, revealing distinct phenotypes linked to neurodevelopmental disorders.
4 citations - Cell BiologybioRxivPreprint
Canonical nuclear envelope protein emerin regulates structure and integrity of the erythrocyte plasma membrane
Brendan O'Brien, Joyleen Oliver, Evrett Thompson…·Kathleen A. Martin
This study shows emerin, a nuclear envelope protein, is expressed in red blood cells and regulates membrane structure and function, with mutations linked to RBC phenotypes like MCV.
- Evolutionary BiologyMolecular Biology and EvolutionPeer-reviewed
Evolutionary innovation in conserved regulatory elements across the mammalian tree of life
Severin Uebbing, Acadia A. Kocher, Marybeth Baumgartner…·James P. Noonan
The paper identifies accelerated evolution in conserved enhancer elements across mammals and links it to regulatory function turnover and developmental gene modifications.
- GeneticsGenome biologyPeer-reviewed
CpG island turnover events predict evolutionary changes in enhancer activity
Acadia A. Kocher, Emily V. Dutrow, Severin Uebbing…·James P. Noonan
The paper shows that turnover of CpG islands in enhancers is linked to changes in enhancer activity across mammals, including humans, and contributes to gene regulatory innovation.
- BioengineeringbioRxivPreprint
High-fidelity enhanced AsCas12a knock-in mice for efficient multiplexed gene editing, disease modeling and orthogonal immunogenetics
DOI 10.1101/2024.03.14.585126 - GenomicsbioRxivPreprint
Genetic dysregulation of an endothelial Ras signaling network in vein of Galen malformations
Shujuan Zhao, Kedous Y. Mekbib, Martijn A. van der Ent…·Kristopher Thomas Kahle
The paper identifies genetic variants in RASA1 and EPHB4 associated with vein of Galen malformations through exome analysis and single-cell transcriptomics.
3 citations - GenomicsNature CommunicationsPeer-reviewed
Modeling uniquely human gene regulatory function in humanized mice
Emily V. Dutrow, Deena Emera, Kristina Yim…·James P. Noonan
The paper examines the role of the human-specific enhancer HACNS1 in human evolution by analyzing its effects on gene expression in humanized mice.
42 citations - GeneticsDevelopmentPeer-reviewed
Disrupting Pitx1 Regulatory Topology Results In Overtly Normal Limb Development
Richard Sarro, Acadia A. Kocher, Deena Emera…·James P. Noonan
The paper disrupts the major promoter-enhancer interaction for Pitx1 in mice and finds minimal phenotypic effects despite complete disruption of the topological interaction.
19 citations