Author

Diego A. Vargas-Blanco

Worcester Polytechnic InstituteORCID 0000-0002-3559-2902Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Molecular Biology· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Approach:machine learning (classical)· 1 Research Focus:sequence-to-function modeling· 1

Frequent Co-Authors

Huaming SuniD· 2 shared Jessica M. KellyiD· 2 shared Scarlet S. ShelliD· 2 shared Ying ZhouiD· 2 shared Abigail R. RapiejkoiD· 1 shared Alexa B. Davis· 1 shared Catherine S. Masiello· 1 shared Dmitry KorkiniD· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersMolecular Biology

Huaming SunORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Molecular BiologyNAR Genomics and BioinformaticsPeer-reviewedSep 28, 2024

Diverse intrinsic properties shape transcript stability and stabilization in Mycolicibacterium smegmatis

Huaming Sun, Diego A. Vargas-Blanco, Ying Zhou…·Scarlet S. Shell

This study identifies transcript properties influencing stability and stabilization in Mycolicibacterium smegmatis under different growth conditions using mRNA degradation profiling and machine learning.

4 citations

bulk RNA-seqmachine learning (classical)

𝕏 PostBluesky

Molecular BiologybioRxivPreprintMar 14, 2023

Mycobacterial RNase E cleaves with a distinct sequence preference and controls the degradation rates of most Mycolicibacterium smegmatis mRNAs

Ying Zhou, Huaming Sun, Diego A. Vargas-Blanco…·Scarlet S. Shell

This study defines the role of RNase E in mRNA degradation in Mycolicibacterium smegmatis, showing it limits degradation of 89% of protein-coding genes and has distinct sequence preferences compared to gram-negative bacteria.

1 citation

bulk RNA-seqexperimental assay

𝕏 PostBluesky