Author

Andy Perkins

Mississippi State UniversityORCID 0000-0002-3583-1010Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:statistical model· 1

Frequent Co-Authors

Abigail Finley· 1 shared Amelia R. WoolumsiD· 1 shared Bindu NanduriiD· 1 shared Brandi B. KarischiD· 1 shared Calin B. Chiribau· 1 shared Cyprianna E. SwiderskiiD· 1 shared Matthew A. ScottiD· 1 shared Molly Mitchell· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperSystems Biology

Abigail Finley

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJul 17, 2026

PathoBench: an open community-driven benchmark registry for pathogen bioinformatics tools

Yibo Dong, Na Li, Calin B. Chiribau…·Andy Perkins

PathoBench provides a benchmark registry for pathogen bioinformatics tools, enabling standardized evaluation and comparison across 10 pathogens using curated datasets and metrics.

DOI 10.64898/2026.07.16.739016

humanbenchmark study

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Systems BiologyPLoS ONEPeer-reviewedNov 3, 2022

Hematological and gene co-expression network analyses of high-risk beef cattle defines immunological mechanisms and biological complexes involved in bovine respiratory disease and weight gain

Matthew A. Scott, Amelia R. Woolums, Cyprianna E. Swiderski…·Brandi B. Karisch

This paper uses gene co-expression networks and hematological data to identify gene modules and hub genes associated with BRD development and weight gain in cattle.

13 citations

bulk RNA-seqstatistical model

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