Author
Jasmine Sakr
University of California, IrvineORCID 0000-0002-4470-3192Unclaimed ORCID profile · follow to get notified of new preprints
Biology Disciplines
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2022-2025 · peak 2/yrCo-Author Collaboration Network
10 top collaborators · 45 mutual co-author links5 papers
Recent·Most cited
- GenomicsbioRxivPreprintDOI 10.64898/2025.12.22.696056
- BioinformaticsPLoS Computational BiologyPeer-reviewed
Long-read sequencing transcriptome quantification with lr-kallisto
Rebekah K. Loving, Delaney K. Sullivan, Fairlie Reese…·Lior S. Pachter
The paper develops lr-kallisto, a tool for accurate long-read transcriptome quantification using ONT data, showing improved results with exome capture.
23 citationstop 2% - GenomicsbioRxivPreprint
The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity
Fairlie Reese, Brian A. Williams, Gabriela Balderrama-Gutierrez…·Ali Mortazavi
Long-read sequencing of 81 human and mouse samples yields 200,000 full-length transcripts plus a triplet framework that separates promoter choice, splicing and 3' end use across tissues.
- NeuroscienceMolecular NeurodegenerationPeer-reviewed
A Trem2*R47H mouse model without cryptic splicing drives age- and disease-dependent tissue damage and synaptic loss in response to plaques
Kristine M. Tran, Shimako Kawauchi, Enikö A. Kramár…·Kim N. Green
50 citationstop 4% - GeneticsbioRxivPreprint
Engineered SMCHD1 and D4Z4 mutations reveal roles of D4Z4 heterochromatin disruption and feedforward DUX4 network activation in FSHD
Xiangduo Kong, Nam Viet Nguyen, Yumeng Li…·Kyoko Yokomori
The paper uses engineered human myoblasts to show that D4Z4 heterochromatin disruption and DUX4 network activation are key in FSHD.
DOI 10.1101/2022.10.14.512332