Emily B. Graham

The paper constructs genome-scale metabolic models for soil bacteria to identify phylogenetically conserved fermentation traits and their metabolic fluxes.

The paper examines how urbanization affects dissolved organic matter and microbial networks in a freshwater estuary by analyzing seasonal and spatial gradients.

This paper models microbial regulatory feedback in organic matter decomposition, finding copiotrophic traits drive positive priming effects.

The paper analyzes urban soil microbiomes to identify taxonomic and functional patterns linked to urbanization, revealing core microbial taxa and metabolic processes associated with urban environments.

The paper integrates soil metagenomes and metabolomes across the US to show microbial potential for decomposing recalcitrant carbon compounds, revealing metabolic specialization among bacterial and archaeal taxa.

The paper compiles a global soil virus dataset to assess biodiversity and biogeochemical impacts, finding most viral diversity remains unexplored and viruses may influence carbon and nutrient cycling.

This paper analyzes 1512 soil metagenomes to uncover genomic patterns of soil microbiomes across environmental factors and biomes, revealing shifts in microbial functions and biogeographical distributions.

The paper links geochemistry and microbial functional potential to organic matter development across seven rivers using DOM characterization, geochemical analyses, and shotgun metagenomics.

This paper introduces a new biogeochemical modeling approach that explicitly represents organic matter thermodynamics to improve predictions of microbial degradation processes and their environmental impacts.

The paper compares multi-omics data to show that metabolome biochemistry, not microbiome composition or gene expression, correlates with elevated biogeochemical function in hyporheic zones.