Rory Kruithoff

This study shows that stochastic colonization and host-to-host transmission significantly influence gut bacterial variability in C. elegans using E. coli under different diets.

This paper introduces a GPU-accelerated framework for processing 3D multiplexed RNA-FISH data, quantifies information loss from axial sampling, and improves post-mortem sample quality.

REPOP reconstructs bacterial populations from platecounts by accounting for dilution and plating uncertainties, revealing hidden multimodality that standard methods obscure.

This paper introduces B-SIM, an unsupervised Bayesian framework for structured illumination microscopy that improves resolution and contrast by accurately modeling noise, outperforming existing methods in both simulated and experimental data.