Author

Martin Selinger

Umeå UniversityORCID 0000-0002-5420-9702Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:CRISPR screen· 2 Approach:deep learning· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Assay:multiome· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2

Frequent Co-Authors

Johan HenrikssoniD· 3 shared Ionut Sebastian MihaiiD· 2 shared Johan TryggiD· 2 shared Mattias N.E. ForselliD· 2 shared Alicia Herrera Curbelo· 1 shared Davide CirilloiD· 1 shared Debojyoti DasiD· 1 shared Ellen BushelliD· 1 shared

Activity by Year

2024-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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3 shared papersMolecular Biology

Johan HenrikssonORCID

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4 papers

Recent·Most cited

ImmunologybioRxivPreprintNov 25, 2025

A conserved transcriptional backbone and rewiring of gene-regulatory networks in activated human CD4⁺ T cells

Ionut Sebastian Mihai, Iker Núñez‐Carpintero, Davide Cirillo…·Martin Selinger

The paper identifies a conserved set of transcription factors in human CD4+ T cell subtypes and shows subtype-specific rewiring of gene regulatory networks during activation and differentiation.

DOI 10.1101/2025.11.25.687998

humanscRNA-seq

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Molecular BiologyNucleic Acids ResearchPeer-reviewedJan 9, 2025

A scalable CRISPR-Cas9 gene editing system facilitates CRISPR screens in the malaria parasite Plasmodium berghei

Thorey K. Jonsdottir, Martina Soledad Paoletta, Takahiro Ishizaki…·Ellen Bushell

The paper develops a scalable CRISPR-Cas9 system for Plasmodium berghei to enable genome-wide knockout screens.

9 citations

mouseCRISPR screen

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Molecular BiologybioRxivPreprintMar 28, 2024

CRISPR-MIP replaces PCR and reveals GC and oversampling bias in pooled CRISPR screens

Martin Selinger, Iryna Yakovenko, Iqra Nazir, Johan Henriksson

CRISPR-MIP replaces PCR for sgRNA quantification, revealing GC and oversampling biases in pooled CRISPR screens.

DOI 10.1101/2024.03.28.587082

CRISPR screenexperimental assay

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ImmunologybioRxivPreprintJan 5, 2024

The CD4 T cell epigenetic JUNB+ state is associated with proliferation and exhaustion

Ionut Sebastian Mihai, Martin Selinger, Nicole Boucheron…·Johan Henriksson

The paper identifies a JUNB+ epigenetic state in CD4 T cells associated with proliferation, exhaustion, and memory formation, and develops a new machine learning tool to analyze its regulation.

2 citations

humanscRNA-seq

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