Author

Katharine H. D. Crawford

University of WashingtonORCID 0000-0002-6223-4019Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:deep learning· 1 Assay:DNA methylation· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:long-read sequencing· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Jesse D. BloomiD· 2 shared Alexander L. GreningeriD· 1 shared Andrew R MackiD· 1 shared Caleb R. CarriD· 1 shared Frederick A. Matsen IViD· 1 shared Gregory PEPPER· 1 shared Hugh K. HaddoxiD· 1 shared Jared Castor· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersMicrobiology

Jesse D. BloomORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

MicrobiologybioRxivPreprintJun 27, 2026

Six years of clinical herpes simplex virus genotypic acyclovir resistance testing confirms common resistance mechanisms and identifies novel mutations

Katharine H. D. Crawford, Jared Castor, Katrina LaTurner…·Alexander L. Greninger

This paper reviews six years of clinical HSV acyclovir resistance testing, confirming common resistance mechanisms and identifying 23 novel UL23 mutations.

DOI 10.64898/2026.06.25.734554

humanDNA methylation

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MicrobiologyImmunityPeer-reviewedJul 15, 2024

Deep mutational scanning reveals functional constraints and antigenic variability of Lassa virus glycoprotein complex

Caleb R. Carr, Katharine H. D. Crawford, Michael Murphy…·Jesse D. Bloom

30 citationstop 1%

virusdeep learning

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BioinformaticsThe Journal of Open Source SoftwarePeer-reviewedDec 11, 2019

alignparse: A Python package for parsing complex features from high-throughput long-read sequencing

Katharine H. D. Crawford, Jesse D. Bloom

alignparse is a Python package that parses complex features from long-read sequencing data by aligning reads to user-defined target sequences and extracting specified features.

50 citations

long-read sequencingexperimental assay

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